cellseg_gsontools
Installation
Initializing search
cellseg_gsontools
cellseg_gsontools
cellseg_gsontools
Home
Getting Started
Getting Started
Installation
Quick start
User Guide
User Guide
Cell/Nuclei Morphology
Cell/Nuclei Neighborhoods
Cell/Nuclei Neighborhood Distances and Characteristics
Cell/Nuclei Neighborhood Diversities
Spatial Grids
Global Spatial Autocorrelation
Local Spatial Autocorrelation
Cell Clustering
Cell Regionalization
Merging Segmentation Maps
Merging Segmentation Maps
Merging WSI-level Segmentation
Spatial Contexts
Spatial Contexts
Within Context
Interface Context
Point Cluster Context
API Reference
API Reference
Spatial Contexts
Spatial Contexts
WithinContext
InterfaceContext
PointClusterContext
Merging
Merging
CellMerger
AreaMerger
I/O
I/O
read_gdf
gdf_to_file
Data
Data
cervix_cells
cervix_tissue
gland_cells
gland_tissue
tumor_stroma_interface_cells
tumor_stroma_interface_tissue
Geometry
Geometry
shape_metric
major_axis_len
minor_axis_len
major_axis_angle
minor_axis_angle
convexity
compactness
circularity
rectangularity
squareness
shape_index
sphericity
solidity
fractal_dimension
eccentricity
elongation
equivalent_rectangular_index
Lines
Lines
medial_lines
voronoi_medial
perpendicular_lines
perependicular_line
line_branches
equal_interval_points
Cell Neighbors
Cell Neighbors
neighborhood
nhood_vals
nhood_type_count
nhood_counts
nhood_dists
Cell Neighborhoods
Cell Neighborhoods
local_character
local_distances
local_diversity
Diversity
Diversity
simpson_index
shannon_index
gini_index
theil_index
Graph
Graph
fit_graph
get_border_crosser_links
dist_thresh_weights_sequential
Clustering
Clustering
cluster_points
cluster_cells
find_lisa_clusters
connected_components
label_connected_components
Links
Links
weights2gdf
link_counts
get_link_combinations
Grid
Grid
fit_spatial_grid
hexgrid_overlay
grid_overlay
grid_classify
Tools
Tools
gdf_apply
clip_gdf
pre_proc_gdf
set_uid
xy_to_lonlat
lonlat_to_xy
Plotting
Plotting
plot_gdf
plot_all
Installation
pip
install
cellseg-gsontools